If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ), 'gf_id' => 'HOM05D000728', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000728' ), 'data_identifier' => 'HOM05D000728', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000728', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '799', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40870' => 'bna', 'A02p28170' => 'bna', 'A03p33600' => 'bna', 'A05p29980' => 'bna', 'A05p43060' => 'bna', 'A05p43070' => 'bna', 'A06p47570' => 'bna', 'A08p36910' => 'bna', 'A09p67830' => 'bna', 'A10p02900' => 'bna', 'Aa31LG1G20380' => 'aar', 'Aa31LG5G14850' => 'aar', 'Aa31LG5G14860' => 'aar', 'Aa31LG5G3280' => 'aar', 'Aa31LG5G3940' => 'aar', 'Aa31LG5G7650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1067' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2687' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4555' => 'aag', 'Actinidia04678' => 'ach', 'Actinidia09520' => 'ach', 'Actinidia09521' => 'ach', 'Actinidia11369' => 'ach', 'Actinidia30132' => 'ach', 'Actinidia30134' => 'ach', 'Actinidia37546' => 'ach', 'Actinidia39926' => 'ach', 'Actinidia39990' => 'ach', 'Ah.02g118320' => 'amhyb', 'Ah.02g119170' => 'amhyb', 'Ah.04g155330' => 'amhyb', 'Ah.08g218230' => 'amhyb', 'Ah.13g072250' => 'amhyb', 'Ah.13g076670' => 'amhyb', 'Ah.15g092570' => 'amhyb', 'AL1G13660' => 'aly', 'AL1G14130' => 'aly', 'AL2G20430' => 'aly', 'AL3G14390' => 'aly', 'AL4G29020' => 'aly', 'AL8G16110' => 'aly', 'Aqoxy1G03585' => 'aox', 'Aqoxy239s001' => 'aox', 'Aqoxy2G03739' => 'aox', 'Aqoxy2G03743' => 'aox', 'Aqoxy37s007' => 'aox', 'Aqoxy5G00153' => 'aox', 'Aqoxy5G00301' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01YPVW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RZIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R0DDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.80TH9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB4BVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K131WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3KASK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M09C1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6V57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UN3WEE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W86IKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9M9U1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YP76SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZB9HG3' => 'arhy', 'AT1G04050' => 'ath', 'AT1G04480' => 'ath', 'AT2G33370' => 'ath', 'AT3G04380' => 'ath', 'AT3G04400' => 'ath', 'AT5G43990' => 'ath', 'ATR0736G036' => 'atr', 'ATR0736G166' => 'atr', 'ATR0736G174' => 'atr', 'ATR0787G208' => 'atr', 'ATR1025G001' => 'atr', 'ATR1025G002' => 'atr', 'Atru.chr2.1053' => 'acertr', 'Atru.chr4.1929' => 'acertr', 'Atru.chr5.1820' => 'acertr', 'Atru.chr5.1822' => 'acertr', 'Atru.chr5.1823' => 'acertr', 'Atru.chr5.3447' => 'acertr', 'AUR62000625' => 'cqu', 'AUR62006978' => 'cqu', 'AUR62008786' => 'cqu', 'AUR62008788' => 'cqu', 'AUR62016174' => 'cqu', 'AUR62025452' => 'cqu', 'AUR62025454' => 'cqu', 'AUR62025455' => 'cqu', 'AUR62035092' => 'cqu', 'AUR62040750' => 'cqu', 'BcaB03g13486' => 'bca', 'BcaB04g19334' => 'bca', 'BcaB04g19337' => 'bca', 'BcaB07g30548' => 'bca', 'BcaC01g04377' => 'bca', 'BcaC03g14190' => 'bca', 'BcaC03g16622' => 'bca', 'BcaC04g20397' => 'bca', 'BcaC05g29945' => 'bca', 'BcaC05g30199' => 'bca', 'BcaC05g30226' => 'bca', 'BcaC05g30227' => 'bca', 'BcaC06g31665' => 'bca', 'BcaC06g34606' => 'bca', 'BcaC09g47797' => 'bca', 'BcaNung04821' => 'bca', 'BcaNung04822' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00840' => 'bna', 'BolC1t05745H' => 'bol', 'BolC2t10499H' => 'bol', 'BolC3t16348H' => 'bol', 'BolC3t16349H' => 'bol', 'BolC5t29046H' => 'bol', 'BolC5t34935H' => 'bol', 'BolC5t34936H' => 'bol', 'BolC7t43183H' => 'bol', 'BolC8t46917H' => 'bol', 'BolC8t52751H' => 'bol', 'BolC9t57286H' => 'bol', 'BraA02t07852Z' => 'bra', 'BraA03t12535Z' => 'bra', 'BraA05t23050Z' => 'bra', 'BraA05t23051Z' => 'bra', 'BraA06t27625Z' => 'bra', 'BraA08t35591Z' => 'bra', 'BraA09t42114Z' => 'bra', 'BraA09t42116Z' => 'bra', 'BraA10t42557Z' => 'bra', 'C02p14720' => 'bna', 'C02p44550' => 'bna', 'C03p40800' => 'bna', 'C05p02650' => 'bna', 'C05p62810' => 'bna', 'C05p62820' => 'bna', 'C07p26560' => 'bna', 'C08p52170' => 'bna', 'CAN.G1487.2' => 'can', 'CAN.G156.1' => 'can', 'CAN.G2137.1' => 'can', 'CAN.G2194.1' => 'can', 'CAN.G220.78' => 'can', 'CAN.G2216.1' => 'can', 'CAN.G605.2' => 'can', 'CAN.G771.37' => 'can', 'CAN.G771.39' => 'can', 'CAN.G941.27' => 'can', 'CAN.G941.29' => 'can', 'CANSAT01G1709' => 'cansat', 'CANSAT01G3020' => 'cansat', 'CANSAT54G0731' => 'cansat', 'CANSAT78G0907' => 'cansat', 'CARHR003400' => 'chi', 'CARHR003820' => 'chi', 'CARHR078560' => 'chi', 'CARHR078580' => 'chi', 'CARHR127370' => 'chi', 'CARHR179330' => 'chi', 'Carub.0001s0321' => 'cru', 'Carub.0001s0368' => 'cru', 'Carub.0003s0359' => 'cru', 'Carub.0003s0360' => 'cru', 'Carub.0004s1499' => 'cru', 'Carub.0008s0456' => 'cru', 'Ca_08735_v3' => 'car', 'Ca_08736_v3' => 'car', 'Ca_09651_v3' => 'car', 'Ca_09653_v3' => 'car', 'Ca_10022_v3' => 'car', 'Ca_27263_v3' => 'car', 'Ca_29586_v3' => 'car', 'CBR_g17597' => 'cbr', 'CBR_g28480' => 'cbr', 'CBR_g34703' => 'cbr', 'CBR_g38690' => 'cbr', 'Cc01_g17860' => 'ccan', 'Cc01_g17870' => 'ccan', 'Cc01_g17890' => 'ccan', 'Cc03_g02870' => 'ccan', 'Cc03_g06120' => 'ccan', 'Cc03_g06220' => 'ccan', 'Cc03_g06230' => 'ccan', 'Cc08_g06310' => 'ccan', 'Cc09_g02870' => 'ccan', 'CDE05G0326' => 'cde', 'CDE05G1476' => 'cde', 'CDE05G1804' => 'cde', 'CDE05G1865' => 'cde', 'CDE05G2498' => 'cde', 'CDE08G0750' => 'cde', 'CDE08G1534' => 'cde', 'CDE11G0701' => 'cde', 'Cfa006370' => 'cfa', 'Cfa006374' => 'cfa', 'Cfa014776' => 'cfa', 'Cfa023737' => 'cfa', 'Ciclev10006177m.g' => 'ccl', 'Ciclev10018896m.g' => 'ccl', 'Ciclev10022774m.g' => 'ccl', 'Ciclev10027963m.g' => 'ccl', 'Ciclev10030747m.g' => 'ccl', 'CiPaw.01G178900' => 'cil', 'CiPaw.02G107700' => 'cil', 'CiPaw.03G269600' => 'cil', 'CiPaw.03G270100' => 'cil', 'CiPaw.04G190100' => 'cil', 'CiPaw.07G073900' => 'cil', 'ClCG06G001460' => 'cla', 'ClCG06G001470' => 'cla', 'ClCG06G007240' => 'cla', 'ClCG07G001340' => 'cla', 'ClCG10G015690' => 'cla', 'ClCG11G010430' => 'cla', 'COL.COLO4_10579' => 'col', 'COL.COLO4_10581' => 'col', 'COL.COLO4_15515' => 'col', 'COL.COLO4_17608' => 'col', 'COL.COLO4_26719' => 'col', 'COL.COLO4_36727' => 'col', 'Cpa.g.c33972' => 'cpa', 'Cpa.g.sc44.138' => 'cpa', 'Cpa.g.sc44.9' => 'cpa', 'Cpa.g.sc51.1' => 'cpa', 'Cpa.g.sc51.2' => 'cpa', 'Cpa.g.sc87.19' => 'cpa', 'Cre04.g211800' => 'cre', 'CsaV3_2G009930' => 'csa', 'CsaV3_2G012470' => 'csa', 'CsaV3_3G028280' => 'csa', 'CsaV3_6G007420' => 'csa', 'CsaV3_6G007430' => 'csa', 'CsaV3_6G040040' => 'csa', 'CSS0002610' => 'camsi', 'CSS0013114' => 'camsi', 'CSS0020820' => 'camsi', 'CSS0025855' => 'camsi', 'CSS0027145' => 'camsi', 'CSS0031500' => 'camsi', 'CSS0031539' => 'camsi', 'CSS0035527' => 'camsi', 'CSS0037082' => 'camsi', 'CSS0038103' => 'camsi', 'CSS0043818' => 'camsi', 'CSS0044661' => 'camsi', 'CSS0045777' => 'camsi', 'CSS0049799' => 'camsi', 'DCAR_000564' => 'dca', 'DCAR_004684' => 'dca', 'DCAR_012580' => 'dca', 'DCAR_024288' => 'dca', 'DCAR_027344' => 'dca', 'Dinv02909' => 'din', 'Dinv16392' => 'din', 'Dinv16394' => 'din', 'Dinv25028' => 'din', 'Dinv27105' => 'din', 'Dinv27107' => 'din', 'Dinv29809' => 'din', 'Dinv34665' => 'din', 'Dinv34666' => 'din', 'Dinv34667' => 'din', 'Duzib052G0410' => 'dzi', 'Duzib132G1265' => 'dzi', 'Duzib133G1262' => 'dzi', 'Duzib138G0819' => 'dzi', 'Duzib138G1687' => 'dzi', 'Duzib151G0967' => 'dzi', 'Duzib211G0238' => 'dzi', 'Duzib211G0287' => 'dzi', 'Duzib212G0371' => 'dzi', 'Duzib264G1118' => 'dzi', 'ECA236G2323' => 'eca', 'ECA238G1878' => 'eca', 'ECA247G0209' => 'eca', 'ECA247G0416' => 'eca', 'ECA247G3020' => 'eca', 'ECA248G0784' => 'eca', 'EL10Ac3g04950' => 'bvu', 'EL10Ac4g09749' => 'bvu', 'EL10Ac7g17671' => 'bvu', 'EL10Ac7g17673' => 'bvu', 'Eucgr.C01189' => 'egr', 'Eucgr.G00093' => 'egr', 'Eucgr.G00095' => 'egr', 'Eucgr.H00134' => 'egr', 'Eucgr.H02959' => 'egr', 'Eucgr.H05040' => 'egr', 'Eucgr.K01433' => 'egr', 'FAN02G3429' => 'fan', 'FAN02G3509' => 'fan', 'FAN05G0097' => 'fan', 'FAN05G3363' => 'fan', 'FAN09G3744' => 'fan', 'FAN12G1474' => 'fan', 'FAN12G4086' => 'fan', 'FAN14G4353' => 'fan', 'FAN14G5550' => 'fan', 'FAN15G3194' => 'fan', 'FAN15G3455' => 'fan', 'FAN17G1968' => 'fan', 'FAN17G2334' => 'fan', 'FAN20G0783' => 'fan', 'FAN20G2039' => 'fan', 'FAN20G2690' => 'fan', 'FAN22G0344' => 'fan', 'FAN22G0597' => 'fan', 'FAN23G0544' => 'fan', 'FAN24G0471' => 'fan', 'FAN24G0771' => 'fan', 'FAN27G1521' => 'fan', 'FAN27G1547' => 'fan', 'FAN27G3134' => 'fan', 'FAN28G1206' => 'fan', 'FvH4_2g02250' => 'fve', 'FvH4_2g20650' => 'fve', 'FvH4_2g20670' => 'fve', 'FvH4_4g04460' => 'fve', 'FvH4_4g04470' => 'fve', 'FvH4_5g06510' => 'fve', 'FvH4_5g31170' => 'fve', 'FvH4_6g01620' => 'fve', 'Glyma.03G166700' => 'gma', 'Glyma.03G166800' => 'gma', 'Glyma.03G249800' => 'gma', 'Glyma.10G039900' => 'gma', 'Glyma.10G040100' => 'gma', 'Glyma.10G134600' => 'gma', 'Glyma.10G165500' => 'gma', 'Glyma.13G126400' => 'gma', 'Glyma.13G126600' => 'gma', 'Glyma.19G167800' => 'gma', 'Glyma.19G167900' => 'gma', 'Glyma.19G247400' => 'gma', 'Glyma.19G247451' => 'gma', 'Glyma.20G085400' => 'gma', 'Glyma.20G227500' => 'gma', 'Gohir.A01G077350' => 'ghi', 'Gohir.A02G042400' => 'ghi', 'Gohir.A07G151300' => 'ghi', 'Gohir.A07G197300' => 'ghi', 'Gohir.A08G191866' => 'ghi', 'Gohir.A09G227800' => 'ghi', 'Gohir.A10G108900' => 'ghi', 'Gohir.A11G133100' => 'ghi', 'Gohir.A11G133200' => 'ghi', 'Gohir.A13G103500' => 'ghi', 'Gohir.D01G064850' => 'ghi', 'Gohir.D02G048000' => 'ghi', 'Gohir.D07G157700' => 'ghi', 'Gohir.D08G209900' => 'ghi', 'Gohir.D09G059250' => 'ghi', 'Gohir.D09G228800' => 'ghi', 'Gohir.D10G158900' => 'ghi', 'Gohir.D11G139200' => 'ghi', 'Gohir.D11G139300' => 'ghi', 'Gohir.D13G106500' => 'ghi', 'Gorai.001G180900' => 'gra', 'Gorai.002G085900' => 'gra', 'Gorai.004G222200' => 'gra', 'Gorai.005G053300' => 'gra', 'Gorai.006G073800' => 'gra', 'Gorai.006G251500' => 'gra', 'Gorai.007G149400' => 'gra', 'Gorai.007G149600' => 'gra', 'Gorai.011G178500' => 'gra', 'Gorai.013G119500' => 'gra', 'GSVIVG01023397001' => 'vvi', 'GSVIVG01027905001' => 'vvi', 'GSVIVG01027907001' => 'vvi', 'GSVIVG01028407001' => 'vvi', 'GSVIVG01028411001' => 'vvi', 'HanXRQChr01g0015011' => 'han', 'HanXRQChr01g0028441' => 'han', 'HanXRQChr06g0172551' => 'han', 'HanXRQChr10g0280661' => 'han', 'HanXRQChr10g0280671' => 'han', 'HanXRQChr14g0451351' => 'han', 'HanXRQChr14g0451361' => 'han', 'HanXRQChr15g0468241' => 'han', 'HanXRQChr15g0468251' => 'han', 'Haze_04405' => 'cav', 'Haze_11450' => 'cav', 'Haze_11451' => 'cav', 'Haze_24694' => 'cav', 'Haze_26389' => 'cav', 'Hma1.2p1_0112F.1_g054660' => 'hma', 'Hma1.2p1_0273F.1_g109260' => 'hma', 'Hma1.2p1_0273F.1_g109270' => 'hma', 'Hma1.2p1_0710F.1_g207240' => 'hma', 'Hma1.2p1_1336F.1_g276470' => 'hma', 'Hma1.2p1_1702F.1_g298300' => 'hma', 'Hma1.2p1_3058F.1_g332170' => 'hma', 'HPP92_014835' => 'vpl', 'HPP92_020776' => 'vpl', 'HPP92_025830' => 'vpl', 'Hund05479' => 'sun', 'Hund05480' => 'sun', 'Hund07183' => 'sun', 'Hund18281' => 'sun', 'Hund18282' => 'sun', 'Hund27521' => 'sun', 'Hund27528' => 'sun', 'Lalb_Chr01g0019531' => 'lal', 'Lalb_Chr02g0149031' => 'lal', 'Lalb_Chr02g0152701' => 'lal', 'Lalb_Chr06g0170681' => 'lal', 'Lalb_Chr06g0170701' => 'lal', 'Lalb_Chr20g0113661' => 'lal', 'Lalb_Chr20g0113681' => 'lal', 'Lalb_Chr21g0314091' => 'lal', 'Lalb_Chr21g0314101' => 'lal', 'Lj1C73G4' => 'lonja', 'Lj1g0011872' => 'lja', 'Lj1g0018773' => 'lja', 'Lj2A44T78' => 'lonja', 'Lj2C1143T10' => 'lonja', 'Lj3A649G56' => 'lonja', 'Lj3A649T61' => 'lonja', 'Lj5g0021110' => 'lja', 'Lj5g0022094' => 'lja', 'Lj5g0023081' => 'lja', 'Lj6g0013858' => 'lja', 'Lsat_1_v5_gn_1_75680' => 'lsa', 'Lsat_1_v5_gn_2_94520' => 'lsa', 'Lsat_1_v5_gn_5_183820' => 'lsa', 'Lsat_1_v5_gn_5_81740' => 'lsa', 'Lsat_1_v5_gn_6_68501' => 'lsa', 'Lsat_1_v5_gn_8_92080' => 'lsa', 'Lsat_1_v5_gn_9_11361' => 'lsa', 'Lsat_1_v5_gn_9_11421' => 'lsa', 'Manes.03G159800' => 'mes', 'Manes.08G140400' => 'mes', 'Manes.12G036000' => 'mes', 'Manes.12G036100' => 'mes', 'Manes.13G040300' => 'mes', 'Manes.13G040500' => 'mes', 'Manes.15G045100' => 'mes', 'Mapoly0004s0038' => 'mpo', 'Mapoly0027s0067' => 'mpo', 'Mapoly0047s0085' => 'mpo', 'MBI01_g34155_MAGBIO' => 'mbi', 'MBI03_g20466_MAGBIO' => 'mbi', 'MBI03_g45664_MAGBIO' => 'mbi', 'MBI07_g12935_MAGBIO' => 'mbi', 'MBI07_g12936_MAGBIO' => 'mbi', 'MBI10_g30715_MAGBIO' => 'mbi', 'MBI10_g30716_MAGBIO' => 'mbi', 'MBI11_g35354_MAGBIO' => 'mbi', 'MBI16_g18656_MAGBIO' => 'mbi', 'MBI18_g11237_MAGBIO' => 'mbi', 'MCO06G196' => 'mco', 'MCO16G353' => 'mco', 'MD00G1060700' => 'mdo', 'MD02G1265700' => 'mdo', 'MD04G1231800' => 'mdo', 'MD04G1231900' => 'mdo', 'MD12G1043600' => 'mdo', 'MD12G1250000' => 'mdo', 'MD13G1220300' => 'mdo', 'MD15G1060900' => 'mdo', 'MD16G1225500' => 'mdo', 'MD17G1185600' => 'mdo', 'Medtr1g026090' => 'mtr', 'Medtr1g064770' => 'mtr', 'Medtr1g069570' => 'mtr', 'Medtr1g069585' => 'mtr', 'Medtr1g080340' => 'mtr', 'Medtr2g070580' => 'mtr', 'Medtr4g017930' => 'mtr', 'Medtr4g066540' => 'mtr', 'Medtr5g054560' => 'mtr', 'Medtr5g464620' => 'mtr', 'Medtr6g082760' => 'mtr', 'Medtr7g098290' => 'mtr', 'Medtr7g098390' => 'mtr', 'Medtr8g106570' => 'mtr', 'MELO3C008647.2' => 'cme', 'MELO3C012846.2' => 'cme', 'MELO3C022386.2' => 'cme', 'MELO3C022387.2' => 'cme', 'MELO3C023039.2' => 'cme', 'Migut.D00469' => 'egut', 'Migut.D00470' => 'egut', 'Migut.F02037' => 'egut', 'Migut.G00477' => 'egut', 'Migut.L00443' => 'egut', 'Migut.N00297' => 'egut', 'Migut.N02225' => 'egut', 'Migut.N02227' => 'egut', 'Migut.O00088' => 'egut', 'MSTRG.12519' => 'ama', 'MSTRG.12520' => 'ama', 'MSTRG.17522' => 'ama', 'MSTRG.18348' => 'ama', 'MSTRG.18349' => 'ama', 'MSTRG.21466' => 'ama', 'MSTRG.9864' => 'ama', 'Nitab4.5_0000194g0300' => 'nta', 'Nitab4.5_0000239g0150' => 'nta', 'Nitab4.5_0000326g0280' => 'nta', 'Nitab4.5_0000326g0290' => 'nta', 'Nitab4.5_0000377g0090' => 'nta', 'Nitab4.5_0000845g0030' => 'nta', 'Nitab4.5_0000845g0130' => 'nta', 'Nitab4.5_0000917g0060' => 'nta', 'Nitab4.5_0001051g0070' => 'nta', 'Nitab4.5_0002538g0040' => 'nta', 'Nitab4.5_0002751g0030' => 'nta', 'Nitab4.5_0003167g0090' => 'nta', 'Nitab4.5_0003342g0010' => 'nta', 'Nitab4.5_0003342g0030' => 'nta', 'Nitab4.5_0004912g0050' => 'nta', 'Nitab4.5_0006534g0020' => 'nta', 'Nitab4.5_0006980g0040' => 'nta', 'Nitab4.5_0009671g0030' => 'nta', 'Nitab4.5_0010039g0020' => 'nta', 'Nitab4.5_0010964g0060' => 'nta', 'Nitab4.5_0011126g0020' => 'nta', 'Nitab4.5_0014618g0020' => 'nta', 'Nitab4.5_0025398g0010' => 'nta', 'Nn1g02926' => 'nnu', 'Nn1g02941' => 'nnu', 'Nn1g02947' => 'nnu', 'Nn2g12646' => 'nnu', 'Nn3g19763' => 'nnu', 'Nn3g20276' => 'nnu', 'Oeu001253.1' => 'oeu', 'Oeu001254.1' => 'oeu', 'Oeu002294.1' => 'oeu', 'Oeu004787.1' => 'oeu', 'Oeu015429.1' => 'oeu', 'Oeu019869.1' => 'oeu', 'Oeu028900.1' => 'oeu', 'Oeu028901.1' => 'oeu', 'Oeu039654.1' => 'oeu', 'Oeu039656.1' => 'oeu', 'Oeu052077.3' => 'oeu', 'Oeu059399.1' => 'oeu', 'Os02g0496700' => 'osa', 'Os02g0621100' => 'osa', 'Os02g0814700' => 'osa', 'Os03g0139100' => 'osa', 'Os04g0692900' => 'osa', 'Os10g0466700' => 'osa', 'Peaxi162Scf00033g03016' => 'pax', 'Peaxi162Scf00033g03023' => 'pax', 'Peaxi162Scf00043g02919' => 'pax', 'Peaxi162Scf00043g02925' => 'pax', 'Peaxi162Scf00415g00911' => 'pax', 'Peaxi162Scf00517g00021' => 'pax', 'Peaxi162Scf00517g00029' => 'pax', 'Peaxi162Scf00517g00031' => 'pax', 'Peaxi162Scf01157g00110' => 'pax', 'Peaxi162Scf01157g00213' => 'pax', 'PGR004G1360' => 'pgr', 'PGR004G2531' => 'pgr', 'PGR031G1287' => 'pgr', 'PGR044G1458' => 'pgr', 'PGR044G2704' => 'pgr', 'PGR109G0003' => 'pgr', 'PGSC0003DMG400003826' => 'stu', 'PGSC0003DMG400014693' => 'stu', 'PGSC0003DMG400014695' => 'stu', 'PGSC0003DMG400015736' => 'stu', 'PGSC0003DMG400017150' => 'stu', 'PGSC0003DMG400017151' => 'stu', 'PGSC0003DMG400020150' => 'stu', 'PGSC0003DMG400020151' => 'stu', 'PGSC0003DMG400029875' => 'stu', 'PGSC0003DMG400031460' => 'stu', 'Phvul.001G164200' => 'pvu', 'Phvul.001G164300' => 'pvu', 'Phvul.006G104500' => 'pvu', 'Phvul.007G189700' => 'pvu', 'Phvul.007G189900' => 'pvu', 'Potri.002G257400' => 'ptr', 'Potri.002G257500' => 'ptr', 'Potri.003G136400' => 'ptr', 'Potri.004G166200' => 'ptr', 'Potri.008G171200' => 'ptr', 'Potri.009G138600' => 'ptr', 'Potri.010G066400' => 'ptr', 'Potri.010G167700' => 'ptr', 'Potri.011G127250' => 'ptr', 'Potri.013G048100' => 'ptr', 'Potri.014G192500' => 'ptr', 'Pp3c16_13640' => 'ppa', 'Pp3c23_4520' => 'ppa', 'Pp3c24_8570' => 'ppa', 'Pp3c26_5450' => 'ppa', 'Pp3c27_860' => 'ppa', 'Pp3c3_14470' => 'ppa', 'Pp3c3_17380' => 'ppa', 'Pp3c8_12060' => 'ppa', 'Pp3c8_12080' => 'ppa', 'Pp3c8_16130' => 'ppa', 'PRCOL_00002238' => 'pco', 'Prupe.1G047000' => 'ppe', 'Prupe.1G047100' => 'ppe', 'Prupe.2G058800' => 'ppe', 'Prupe.6G351200' => 'ppe', 'Prupe.6G351300' => 'ppe', 'Prupe.7G021400' => 'ppe', 'Prupe.8G216300' => 'ppe', 'Psat0s2171g0120' => 'psa', 'Psat0s2767g0080' => 'psa', 'Psat2g081960' => 'psa', 'Psat3g053600' => 'psa', 'Psat3g055160' => 'psa', 'Psat6g062880' => 'psa', 'Psat6g062960' => 'psa', 'Psat6g143800' => 'psa', 'PSO017G0589' => 'pso', 'PSO017G3969' => 'pso', 'PSO017G6872' => 'pso', 'PSO060G0001' => 'pso', 'PSO063G6429' => 'pso', 'PSO151G0231' => 'pso', 'PSO170G1213' => 'pso', 'PSO339G2263' => 'pso', 'PSO339G2780' => 'pso', 'PSO339G3977' => 'pso', 'PSO356G0053' => 'pso', 'PSO357G0642' => 'pso', 'PSO384G2473' => 'pso', 'PSO478G2353' => 'pso', 'PSO675G3487' => 'pso', 'PSO801G0367' => 'pso', 'PSO832G2412' => 'pso', 'QL03p029707' => 'qlo', 'QL05p025594' => 'qlo', 'QL06p020805' => 'qlo', 'QL06p020826' => 'qlo', 'QL06p020848' => 'qlo', 'QL09p041181' => 'qlo', 'RcHm_v2.0_Chr1g0350421' => 'rch', 'RcHm_v2.0_Chr2g0145581' => 'rch', 'RcHm_v2.0_Chr3g0449441' => 'rch', 'RcHm_v2.0_Chr3g0449451' => 'rch', 'RcHm_v2.0_Chr4g0392651' => 'rch', 'RcHm_v2.0_Chr4g0395041' => 'rch', 'RcHm_v2.0_Chr4g0395051' => 'rch', 'RcHm_v2.0_Chr4g0395091' => 'rch', 'RcHm_v2.0_Chr4g0395151' => 'rch', 'RcHm_v2.0_Chr4g0395171' => 'rch', 'RcHm_v2.0_Chr4g0395181' => 'rch', 'RcHm_v2.0_Chr6g0245941' => 'rch', 'RcHm_v2.0_Chr6g0268221' => 'rch', 'RcHm_v2.0_Chr6g0286831' => 'rch', 'RcHm_v2.0_Chr6g0286851' => 'rch', 'RcHm_v2.0_Chr7g0201931' => 'rch', 'RcHm_v2.0_Chr7g0228041' => 'rch', 'Rhsim01G0261000' => 'rsi', 'Rhsim02G0043300' => 'rsi', 'Rhsim04G0173000' => 'rsi', 'Rhsim05G0171700' => 'rsi', 'Rhsim13G0039500' => 'rsi', 'Rhsim13G0039700' => 'rsi', 'Sabra02G0195800' => 'sbr', 'Sabra02G0195900' => 'sbr', 'Sabra09G0107300' => 'sbr', 'Sabra13G0044100' => 'sbr', 'SalBow3G0046' => 'sbo', 'SalBow4G1342' => 'sbo', 'SalBow4G2105' => 'sbo', 'SalBow6G3803' => 'sbo', 'Sc06g0006720' => 'sci', 'Sc13g0006190' => 'sci', 'Sc17g0002720' => 'sci', 'Sc19g0003320' => 'sci', 'Sc25g0003570' => 'sci', 'Sed0000832' => 'sed', 'Sed0005606' => 'sed', 'Sed0007026' => 'sed', 'Sed0009313' => 'sed', 'Sed0009375' => 'sed', 'Sed0011429' => 'sed', 'Sed0013479' => 'sed', 'Sed0014633' => 'sed', 'Sed0014996' => 'sed', 'Sed0015430' => 'sed', 'SEGI_26686' => 'sgi', 'SEGI_36355' => 'sgi', 'SEGI_37824' => 'sgi', 'SEGI_38958' => 'sgi', 'SGA_v2.0_scaffold12G06304' => 'sas', 'SGA_v2.0_scaffold138G35191' => 'sas', 'SGA_v2.0_scaffold1G00645' => 'sas', 'SGA_v2.0_scaffold31G12641' => 'sas', 'SGA_v2.0_scaffold42G16181' => 'sas', 'SGA_v2.0_scaffold62G21458' => 'sas', 'SGA_v2.0_scaffold67G22698' => 'sas', 'SGA_v2.0_scaffold92G28291' => 'sas', 'SHI26765' => 'shi', 'SHI26767' => 'shi', 'SHI30109' => 'shi', 'SMO347G0523' => 'smo', 'SMO353G0240' => 'smo', 'SMO361G0288' => 'smo', 'Solyc06g008130.4' => 'sly', 'Solyc06g008170.3' => 'sly', 'Solyc06g083760.3' => 'sly', 'Solyc06g083780.3' => 'sly', 'Solyc09g072865.1' => 'sly', 'Solyc09g072890.2' => 'sly', 'Solyc09g090610.3' => 'sly', 'Solyc09g090630.3' => 'sly', 'Sopen01g010620' => 'spe', 'Sopen03g018840' => 'spe', 'Sopen06g002990' => 'spe', 'Sopen06g035170' => 'spe', 'Sopen06g035190' => 'spe', 'Sopen09g028670' => 'spe', 'Sopen09g028690' => 'spe', 'Sopen09g028710' => 'spe', 'Sopen09g033550' => 'spe', 'Sopen09g033570' => 'spe', 'Sp1g03310' => 'spa', 'Sp2g08820' => 'spa', 'Sp3g03280' => 'spa', 'Sp3g03290' => 'spa', 'Sp4g15680' => 'spa', 'TAR365G0114' => 'tar', 'TAR365G0137' => 'tar', 'TAR365G0573' => 'tar', 'TAR633G0279' => 'tar', 'TAR633G0608' => 'tar', 'TAR633G0794' => 'tar', 'TAR633G1057' => 'tar', 'TAR633G1757' => 'tar', 'TAR633G2756' => 'tar', 'TAR636G1959' => 'tar', 'THA.LOC104800627' => 'tha', 'THA.LOC104801129' => 'tha', 'THA.LOC104816003' => 'tha', 'THA.LOC104820765' => 'tha', 'THA.LOC104820767' => 'tha', 'THA.LOC104826093' => 'tha', 'THA.LOC104826351' => 'tha', 'THA.LOC104827283' => 'tha', 'Thecc.01G251600' => 'tca', 'Thecc.01G251800' => 'tca', 'Thecc.04G263100' => 'tca', 'Thecc.05G268100' => 'tca', 'Thhalv10003157m.g' => 'esa', 'Thhalv10007184m.g' => 'esa', 'Thhalv10008536m.g' => 'esa', 'Thhalv10009056m.g' => 'esa', 'Thhalv10017398m.g' => 'esa', 'Thhalv10020577m.g' => 'esa', 'Thhalv10021724m.g' => 'esa', 'TPR.G31882' => 'tpr', 'TPR.G31889' => 'tpr', 'TPR.G31890' => 'tpr', 'TPR.G31974' => 'tpr', 'TPR.G40732' => 'tpr', 'TPR.G5647' => 'tpr', 'TPR.G5674' => 'tpr', 'TWI09G0508' => 'twi', 'TWI12G0638' => 'twi', 'TWI12G1257' => 'twi', 'TWI18G0707' => 'twi', 'TWI18G1148' => 'twi', 'TWI32G0065' => 'twi', 'TWI34G0424' => 'twi', 'TWI53G2148' => 'twi', 'TWI60G1581' => 'twi', 'TWI73G0599' => 'twi', 'TWI79G0715' => 'twi', 'TWI79G1576' => 'twi', 'unitig_22.g5293' => 'ugi', 'unitig_26.g10129' => 'ugi', 'unitig_26.g10130' => 'ugi', 'unitig_37.g12286' => 'ugi', 'unitig_60.g25730' => 'ugi', 'unitig_699.g19320' => 'ugi', 'unitig_85.g27265' => 'ugi', 'vmacro02705' => 'vma', 'vmacro02707' => 'vma', 'vmacro14800' => 'vma', 'vmacro14801' => 'vma', 'vmacro14802' => 'vma', 'vmacro15474' => 'vma', 'vmacro19985' => 'vma', 'VMungo0540G2393' => 'vmu', 'VMungo0720G0392' => 'vmu', 'VMungo0720G3037' => 'vmu', 'VMungo1383G0273' => 'vmu', 'VMungo1383G1125' => 'vmu', 'VMungo1383G2556' => 'vmu', 'Zm00001eb003180' => 'zma', 'Zm00001eb038540' => 'zma', 'Zm00001eb076530' => 'zma', 'Zm00001eb175610' => 'zma', 'Zm00001eb185000' => 'zma', 'Zm00001eb191550' => 'zma', 'Zm00001eb194880' => 'zma', 'Zm00001eb197600' => 'zma', 'Zm00001eb222160' => 'zma', 'Zm00001eb402790' => 'zma' ) $gf_id = 'HOM05D000728' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000728' ) $data_identifier = 'HOM05D000728' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 17, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 9, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 25, 'fve' => (int) 8, 'gma' => (int) 15, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 7, 'nta' => (int) 23, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402790' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1